All publications by the CEDAR team are listed by year of publication. References are further divided into whether they are about CEDAR in general (publications under “General”) or about the CEDAR Analysis Resource (publications under “Tools”).
General
Using the Cancer Epitope Database and Analysis Resource (2025) 40779104.pdf (2.8 MB)
A meta-analysis of experimentally validated neo-epitopes: patterns, biases, and opportunities (2025) 41196374.pdf (2.5 MB)
The GF-NEO Discovery Platform Unveils a [KQE][DG] Sequence Motif within Fusion Neoantigens in Pediatric Cancer (2025) 41567246.pdf (2.1 MB)
Standardizing Free-Text Data Exemplified by Age and Data-Location Fields in the Immune Epitope Database (2024) 39606440.pdf (2.1 MB)
IEDB-3D 2.0: Structural data analysis within the Immune Epitope Database (2023)
36806329.pdf (2.4 MB)
AIRR-C IG Reference Sets: curated sets of immunoglobulin heavy and light chain germline genes (2023) 38406579.pdf (1.9 MB)
A meta-analysis of epitopes in prostate-specific antigens identifies opportunities and knowledge gaps (2023) 37679223.pdf (1.7 MB)
IEDB and CEDAR: Two Sibling Databases to Serve the Global Scientific Community (2023) 37258911.pdf (1.2 MB)
The Cancer Epitope Database and Analysis Resource (CEDAR) (2022) 36250634.pdf (3.1 MB)
The Cancer Epitope Database and Analysis Resource (CEDAR); a blueprint for establishment of a new bioinformatic resource for use by the cancer immunology community (2021) 34504503.pdf (387.1 KB)
Tools
Comparative Performance Analysis of Neo-epitope Prediction Algorithms in Head and Neck Cancer (2025) 40103827.pdf (2.6 MB)
TCRCluster: a novel approach to T-cell receptor latent featurization and clustering using contrastive learning-guided two-stage variational autoencoders (2025) 40432791.pdf (1.8 MB)
AbEpiTope-1.0: Improved antibody target prediction by use of AlphaFold and inverse folding (2025) 40512857.pdf (3.8 MB)
T‐cell receptor insights: Determinants of Major Histocompatibility Complex class I versus class II recognition (2025) 40815345.pdf (2.6 MB)
Next-Generation IEDB Tools: A platform for epitope prediction and analysis (2024) 38783079.pdf (1.5 MB)
The receiver operating characteristic curve accurately assesses imbalanced datasets (2024) 39005487.pdf (3.9 MB)
Integrated germline and somatic features reveal divergent immune pathways driving ICB response (2024) 39255339.pdf (551.7 KB)
A large-scale study of peptide features defining immunogenicity of cancer neo-epitopes (2024) 38288446.pdf (2.0 MB)
Accurate prediction of HLA class II antigen presentation across all loci using tailored data acquisition and refined machine learning (2023) 38000035.pdf (2.7 MB)
PEPMatch: a tool to identify short peptide sequence matches in large sets of
proteins (2023) 38110863.pdf (1.7 MB)
Autoimmune alleles at the major histocompatibility locus modify melanoma susceptibility (2023) 37339630.pdf (2.6 MB)
Estimating Tissue-Specific Peptide Abundance from Public RNA-Seq Data (2023)
36713080.pdf (1.8 MB)
Subcellular location of source proteins improves prediction of neoantigens for immunotherapy (2022) 36314681.pdf (2.3 MB)
Predicting the Success of Fmoc-Based Peptide Synthesis (2022) 35847273.pdf (3.1 MB)
Combined assessment of MHC binding and antigen expression improves T cell epitope predictions (2022) 35128348.pdf (2.3 MB)